PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01388.1.g00090.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 311aa    MW: 33063.3 Da    PI: 5.9139
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01388.1.g00090.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.26.6e-16114163355
                           AP2   3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   + GVr ++ +g+++AeIrd    + k +r++lg+f+++e Aa a+++a+ + +g
  Zpz_sc01388.1.g00090.1.am.mk 114 FIGVRKRP-WGKFAAEIRDsT--R-KGARVWLGTFDSPEAAALAYDQAAFSVRG 163
                                   67******.**********32..2.24**********************99887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003806.5E-30113177IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-27113172IPR001471AP2/ERF domain
PROSITE profilePS5103221.614113171IPR001471AP2/ERF domain
PRINTSPR003679.5E-8114125IPR001471AP2/ERF domain
CDDcd000181.99E-15114173No hitNo description
PfamPF008478.0E-12114163IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-20114172IPR016177DNA-binding domain
PRINTSPR003679.5E-8137153IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MDPYASYFSH PSTVAPGKLE STGAGDFDRG GDMQHLLDAL IHDMEADYSN GSFSDESASC  60
SEESSSTLAS SSAGNSNGNG NGNVGMADDD RHQPQQRQRQ DDEKQQKQSA TKAFIGVRKR  120
PWGKFAAEIR DSTRKGARVW LGTFDSPEAA ALAYDQAAFS VRGAAALLNF PVARVQDSLR  180
ALALTSASAG AGSPVLALKS RHSLRKRSPN KNKNRPRSEA AVAAAAVAQR NSSPQQQPPP  240
HCPGGVVELE DLGADYLDEL LRAAVAAAAV AQRNSSPQQQ PPPHCPGGVV ELEDLGADYL  300
DELLRVSSQY Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-23112172464ATERF1
3gcc_A1e-23112172464ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001130815.13e-63putative AP2/EREBP transcription factor superfamily protein
TrEMBLK4JRR94e-63K4JRR9_MAIZE; AP2-EREBP-type transcription factor (Fragment)
TrEMBLB4FAN64e-63B4FAN6_MAIZE; Uncharacterized protein
STRINGGRMZM2G123119_P011e-62(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.11e-36ethylene response factor 1